Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
E
EI - Jeux Evolu
Manage
Activity
Members
Labels
Plan
Issues
Issue boards
Milestones
Wiki
Code
Merge requests
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Snippets
Build
Pipelines
Jobs
Pipeline schedules
Artifacts
Deploy
Releases
Package Registry
Container Registry
Model registry
Operate
Environments
Terraform modules
Monitor
Incidents
Analyze
Value stream analytics
Contributor analytics
CI/CD analytics
Repository analytics
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
Nadin Thibault
EI - Jeux Evolu
Commits
d2211c0e
Commit
d2211c0e
authored
2 years ago
by
Nadin Thibault
Browse files
Options
Downloads
Patches
Plain Diff
big changes
parent
1e4de6fb
No related branches found
No related tags found
No related merge requests found
Changes
4
Hide whitespace changes
Inline
Side-by-side
Showing
4 changed files
3dna/Constantes.py
+4
-9
4 additions, 9 deletions
3dna/Constantes.py
3dna/RotTable.py
+11
-2
11 additions, 2 deletions
3dna/RotTable.py
3dna/Selections.py
+1
-0
1 addition, 0 deletions
3dna/Selections.py
3dna/__main__.py
+90
-6
90 additions, 6 deletions
3dna/__main__.py
with
106 additions
and
17 deletions
3dna/Constantes.py
+
4
−
9
View file @
d2211c0e
ALPHA
=
3
p
=
0.2
Pm
=
0.3
size
=
32
nb_iter
=
3
0
size
=
64
nb_iter
=
10
0
AGRANDISSEMENT
=
5
nom_selection
=
"
selection_
r
ou
lette
"
nom_croisement
=
"
croisement_
milieu
"
nom_selection
=
"
selection_
t
ou
rnoi
"
nom_croisement
=
"
croisement_
en_un_point
"
List_of_genes
=
[
"
AA
"
,
"
AC
"
,
"
AG
"
,
"
AT
"
,
<<<<<<<
HEAD
"
TA
"
,
"
CA
"
,
"
CC
"
,
"
CG
"
,
"
GC
"
,
"
CT
"
]
#les gènes à modifier
Symetrique
=
{
"
AA
"
:
"
TT
"
,
"
AC
"
:
"
TG
"
,
"
AG
"
:
"
TC
"
,
"
AT
"
:
None
,
"
TA
"
:
None
,
"
CA
"
:
"
GT
"
,
"
CC
"
:
"
GG
"
,
"
CG
"
:
None
,
"
GC
"
:
None
,
"
CT
"
:
"
GA
"
}
#les symétriques de ces gènes
=======
"
TA
"
,
"
CA
"
,
"
CC
"
,
"
CG
"
,
"
GC
"
,
"
CT
"
]
pas
=
10
>>>>>>>
226
c2ce36132e35dbdd4a7ab4930dc5268002c36
This diff is collapsed.
Click to expand it.
3dna/RotTable.py
+
11
−
2
View file @
d2211c0e
...
...
@@ -81,8 +81,13 @@ class RotTable:
zf
=
traj
.
getTraj
()[
n
-
1
][
2
]
self
.
dist_carre
=
(
xf
-
x0
)
**
2
+
(
yf
-
y0
)
**
2
+
(
zf
-
z0
)
**
2
return
math
.
sqrt
(
self
.
dist_carre
)
def
evaluate
(
self
,
molecule
):
# renvoie la distance au carrée séparant les deux extrémités de la molecule telle que générée par la table self
def
prod_scalaire
(
X
,
Y
,
Z
,
T
):
s
=
0
for
i
in
range
(
3
):
s
+=
(
Y
[
i
]
-
X
[
i
])
*
(
T
[
i
]
-
Z
[
i
])
return
s
traj
=
Traj3D
(
False
)
traj
.
compute
(
molecule
+
molecule
[:
AGRANDISSEMENT
],
self
)
...
...
@@ -96,7 +101,11 @@ class RotTable:
yf
=
traj
.
getTraj
()[
n
-
AGRANDISSEMENT
+
i
][
1
]
zf
=
traj
.
getTraj
()[
n
-
AGRANDISSEMENT
+
i
][
2
]
res
=
res
+
(
xf
-
x0
)
**
2
+
(
yf
-
y0
)
**
2
+
(
zf
-
z0
)
**
2
return
res
X
=
traj
.
getTraj
()[
0
]
Y
=
traj
.
getTraj
()[
1
]
Z
=
traj
.
getTraj
()[
-
2
]
T
=
traj
.
getTraj
()[
-
1
]
return
res
+
prod_scalaire
(
X
,
Y
,
Z
,
T
)
def
evaluate2
(
self
,
molecule
):
n
=
len
(
molecule
)
...
...
This diff is collapsed.
Click to expand it.
3dna/Selections.py
+
1
−
0
View file @
d2211c0e
...
...
@@ -79,6 +79,7 @@ def selection_roulette(molecule, liste_individus, n=None):
def
roulette
(
molecule
,
liste_individus
):
val_ind
=
[
ind
.
evaluate
(
molecule
)
for
ind
in
liste_individus
]
values_alea
=
[
val
*
random
.
random
()
for
val
in
val_ind
]
values_alea
[
0
]
=
0
#On garde le meilleur surement
liste_individus
=
[
e
for
_
,
e
in
sorted
(
zip
(
values_alea
,
liste_individus
))]
return
liste_individus
[:
len
(
liste_individus
)
//
2
]
...
...
This diff is collapsed.
Click to expand it.
3dna/__main__.py
+
90
−
6
View file @
d2211c0e
...
...
@@ -102,6 +102,83 @@ def tests_selection():
plt
.
show
()
plt
.
savefig
(
"
selection_methodes.png
"
)
def
tests_selection_size
():
D_un
=
[]
D_deux
=
[]
D_milieu
=
[]
S
=
[
int
(
1.5
**
i
+
10
)
for
i
in
range
(
20
)]
rot_table
=
RotTable
()
traj
=
Traj3D
()
traj_final
=
Traj3D
()
# Read file
lineList
=
[
line
.
rstrip
(
'
\n
'
)
for
line
in
open
(
args
.
filename
)]
# Formatting
seq
=
''
.
join
(
lineList
[
1
:])
for
size
in
S
:
popu1
=
Population
(
size
)
popu2
=
Population
(
size
)
popu2
.
troupeau
=
popu1
.
troupeau
.
copy
()
popu3
=
Population
(
size
)
popu3
.
troupeau
=
popu2
.
troupeau
.
copy
()
popu1
.
make_evolution_iter
(
seq
,
'
selection_roulette
'
,
nom_croisement
,
nb_iter
)
popu2
.
make_evolution_iter
(
seq
,
'
selection_elitisme
'
,
nom_croisement
,
nb_iter
)
popu3
.
make_evolution_iter
(
seq
,
'
selection_tournoi
'
,
nom_croisement
,
nb_iter
)
_
,
value1
=
popu1
.
meilleur_distance
(
seq
)
_
,
value2
=
popu2
.
meilleur_distance
(
seq
)
_
,
value3
=
popu3
.
meilleur_distance
(
seq
)
D_un
.
append
(
value1
)
D_deux
.
append
(
value2
)
D_milieu
.
append
(
value3
)
plt
.
clf
()
plt
.
plot
(
N
,
D_un
,
label
=
'
selection_roulette
'
)
plt
.
plot
(
N
,
D_deux
,
label
=
'
selection_elitisme
'
)
plt
.
plot
(
N
,
D_milieu
,
label
=
'
selection_tournoi
'
)
plt
.
yscale
(
'
log
'
)
plt
.
xlabel
(
"
Iteration
"
)
plt
.
ylabel
(
"
Distance
"
)
plt
.
grid
()
plt
.
legend
()
plt
.
show
()
plt
.
savefig
(
"
selection_methodes_size.png
"
)
def
tests_croisements_size
():
D_un
=
[]
D_deux
=
[]
D_milieu
=
[]
S
=
[
int
(
1.5
**
i
+
10
)
for
i
in
range
(
20
)]
rot_table
=
RotTable
()
traj
=
Traj3D
()
traj_final
=
Traj3D
()
# Read file
lineList
=
[
line
.
rstrip
(
'
\n
'
)
for
line
in
open
(
args
.
filename
)]
# Formatting
seq
=
''
.
join
(
lineList
[
1
:])
for
size
in
S
:
popu1
=
Population
(
size
)
popu2
=
Population
(
size
)
popu2
.
troupeau
=
popu1
.
troupeau
.
copy
()
popu3
=
Population
(
size
)
popu3
.
troupeau
=
popu2
.
troupeau
.
copy
()
popu1
.
make_evolution_iter
(
seq
,
nom_selection
,
'
croisement_en_un_point
'
,
nb_iter
)
popu2
.
make_evolution_iter
(
seq
,
nom_selection
,
'
croisement_en_deux_points
'
,
nb_iter
)
popu3
.
make_evolution_iter
(
seq
,
nom_selection
,
'
croisement_milieu
'
,
nb_iter
)
_
,
value1
=
popu1
.
meilleur_distance
(
seq
)
_
,
value2
=
popu2
.
meilleur_distance
(
seq
)
_
,
value3
=
popu3
.
meilleur_distance
(
seq
)
D_un
.
append
(
value1
)
D_deux
.
append
(
value2
)
D_milieu
.
append
(
value3
)
plt
.
clf
()
plt
.
plot
(
N
,
D_un
,
label
=
'
selection_roulette
'
)
plt
.
plot
(
N
,
D_deux
,
label
=
'
selection_elitisme
'
)
plt
.
plot
(
N
,
D_milieu
,
label
=
'
selection_tournoi
'
)
plt
.
yscale
(
'
log
'
)
plt
.
xlabel
(
"
Iteration
"
)
plt
.
ylabel
(
"
Distance
"
)
plt
.
grid
()
plt
.
legend
()
plt
.
show
()
plt
.
savefig
(
"
selection_methodes_size.png
"
)
def
test_opt
():
time0
=
time
.
time
()
...
...
@@ -211,7 +288,8 @@ def main():
print
(
"
time :
"
,
time
.
time
()
-
time0
)
def
evolution_fitness
():
#evolution de la fitness au cours de l'évaluation
D
=
[]
D_dist
=
[]
D_score
=
[]
N
=
[
i
for
i
in
range
(
nb_iter
)]
rot_table
=
RotTable
()
traj
=
Traj3D
()
...
...
@@ -224,17 +302,20 @@ def evolution_fitness():#evolution de la fitness au cours de l'évaluation
for
i
in
range
(
nb_iter
):
print
(
i
)
_
,
value
=
popu1
.
meilleur_distance
(
seq
)
D
.
append
(
value
)
D_dist
.
append
(
value
)
_
,
value
=
popu1
.
meilleur
(
seq
)
D_score
.
append
(
value
/
1e4
)
popu1
.
iteration
(
seq
,
nom_selection
,
nom_croisement
)
plt
.
clf
()
plt
.
plot
(
N
,
D
)
plt
.
plot
(
N
,
D_dist
,
label
=
'
Distance
'
)
plt
.
plot
(
N
,
D_score
,
label
=
'
Score
'
)
plt
.
yscale
(
'
log
'
)
plt
.
xlabel
(
"
Iteration
"
)
plt
.
ylabel
(
"
Distance
"
)
plt
.
ylabel
(
"
Distance
/Score
"
)
plt
.
grid
()
plt
.
legend
()
plt
.
show
()
plt
.
savefig
(
"
fitness au cours de l
'
evo.png
"
)
plt
.
savefig
(
"
fitness
et distance
au cours de l
'
evo.png
"
)
#plt.close()
def
fitness_size
():
#evolution de la fitness au cours de l'évaluation
...
...
@@ -271,11 +352,14 @@ def fitness_size():#evolution de la fitness au cours de l'évaluation
#plt.close()
if
__name__
==
"
__main__
"
:
evolution_fitness
()
main
()
'''
fitness_size()
main()
test_opt()
tests_croisements()
tests_selection()
evolution_fitness()
tests_selection_size()
tests_croisements_size()
'''
This diff is collapsed.
Click to expand it.
Preview
0%
Loading
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Save comment
Cancel
Please
register
or
sign in
to comment